SE1820260

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10588
  • Glycine max
  • SE1820260
  • Mutator
  • M49
  • Gm06:21415757-21416141
  • TTAATTTAA
  • TAATTTAAGGGTAAATAGCCAAATTTATTCTTGAAATTTTGAGGTGTTGACAAATTTGTCCTTGAAAGATGGAAAATTTAAATTTAGTCCTTGAATGTTAAAAAAATGCGACAAATTAATCTTGC

Secondary structure and sequence

TSD    TIR
5'



3'
T   T              C       A   -      TTT   G   T   C    TT                A   T          C         TA     A   G        A        A     ----TAA   CAAATTGATCCCTAAACTTTACAACTTAATATCAAATTAGTCCTAAAAAAT
 TAA TTAAGGGTAAATAG CAAATTT TTC TTGAAA   TGA GTG TGA AAAT  GTCCTTGAAAGATGGA AAT TAAATTTAGT CTTGAATGT  AAAAA TGC ACAAATTA TCTTGCAC CAATT       TGA                                                   
 ||| |||||||||||||| ||||||| ||| ||||||   ||| ||| ||| ||||  |||||||||||||||| ||| |||||||||| |||||||||  ||||| ||| |||||||| |||||||| |||||       |||                                                    
 ATT AATTCCCATTTATT GTTTAAA AGG GACTTT   ACT CGC ACT TTTA  CAGGGACTTTCTACTT TTA GTTTGAATCA GGATTTGCA  TTTTT ACG TGTTTAAT AGGATGGT AATTT       CTG                                                   
A   T              A       -   C      CAC   A   C   T    CC                G   T          A         CC     C   A        C        -     AAACACT   ATAAAACAGTAATTCAAAATTACAAGCTCCTGGTTAAACTGTTATTTAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End