SE1820266

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10594
  • Glycine max
  • SE1820266
  • Mutator
  • M1
  • Gm06:16448438-16448812
  • TTTTGGTTG
  • GGGGTGTTGTTAGGTGCACCCAACATTATTGCTGGTGTATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTGGTT                      AC       C         CAACAC      TGAAATGACGAAAATATCCTTGATCTGTAAGTCATTTAAGTTGATCCGTAAGTGTTTTATGGATCAAGTTGATCCGTAAGGCTTCTATGGATCAACTTGATCCGTAAGCCTTTTACGGAACAATACAGA
        GGGGTGTTGTTAGGTGCACCCA  ATTATTG TGGTGTATC      TTAAGG                                                                                                                                 
        ||||||||||||||||||||||  ||||||| |||||||||      ||||||                                                                                                                                 A
        TCCCACAACGATCCACGTGGGT  TAATAAT ACCACGTGG      ATCGTA                                                                                                                                 
GTTGGTTT                      CT       T         ------      AAAATTTTTTATGGTTTTGACGGGGACATGAAAAAAGCGTAAACACTACTCACACACACTCCCACCAGATATTTAGCATGTCTAGTTCAATTAAGCATTCCAACTATGCCTAGTTCAACTAGGCATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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