Plant MITE

SE1820269

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10597
Glycine max
SE1820269
Mutator
M1
Gm12:39506518-39506879
AAAAAATGT
TGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCCAGCATT

Secondary structure and sequence

TSD TIR

5'

3'

AAAAAATG                    C                    C      TTATTAAAATA   AAAT   --   -    TTTTTTTTGTATTTGTGATGGATGTGTGAGGGTGGTCCGTAAATCGTACAGATCAAGTTAATCCGTAAGGTTGATACGAACCAACTTGATTCGTAAGTCTTTT
        TGGGTGTTGCTAGGTGCACC AGCATTATTGCTGGTGCACC AGCATT           TCA    TGT  CCG TACG                                                                                                       
        |||||||||||||||||||| |||||||||||||||||||| ||||||           |||    |||  ||| ||||                                                                                                       A
        ACCCACAACGATCCACGTGG TCGTAATAACGACCACGTGG TCGTGA           ATT    CCA  TTA TGCT                                                                                                       
TGTAAAAA                    A                    -      -----------   ----   CT   C    TTTATGGGAACTAAGCATTCGGTAAATTCAACTAGATATTTTCGGAATGTCTAGTTCAACTAAGCATTCTGAAGATGCCTAGTTCAACTAGGCATAACAAGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820269

AAAAAATGTGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCCAGCATTTTATTAAAATATCAAAATTGTCCGTACGTTTTTTTTGTATTTGTGATGGATGTGTGAGGGTGGTCCGTAAATCGTACAGATCAAGTTAATCCGTAAGGTTGATACGAACCAACTTGATTCGTAAGTCTTTTACGGAACAATACGGATCAACTTGATCCGTAGAAGTCTTACGAATCAACTTGATCTGTAAGGCTTTTATAGATCAACTTAAATGGCTTACGAATCAAGGGTATTTTCGTCATTTCACCTTAAGTGCTGGTGCACCAGCAATAATGCTAGGTGCACCTAGCAACACCCAAAAAATGT

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