Plant MITE

SE3140003

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10600
Fragaria vesca
SE3140003
CACTA
FrvC2
LG3:9867238-9867437
TAT
AGTCACCACCACAATATGGGGCAAAGGCCACACATCTTATGTGGCCAATAGAGGTGTGGTAATTTTCAGTAAGTGTGGCAA

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNC G       C               G                  C                    -------   -   A         ATGAG   AT AGTT
                  A TCACCAC ACAATATGGGGCAAA GCCACACATCTTATGTGG CAATAGAGGTGTGGTAATTT       TCA GTA GTGTGGCAA     CTT  T    
                  | ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||       ||| ||| |||||||||     |||  |     
                  T AGTGGTG TGTTATGCCCCGTTT CGGTGTGTAGAATACACC GTTATCTCCACACCGTTAGG       AGT TAT TACACCGTT     GAA  A    
                   G       A               A                  C                    GTATATT   G   A         AAAAG   GT AGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3140003

TATACTCNGTCATNCTNCAGTCACCACCACAATATGGGGCAAAGGCCACACATCTTATGTGGCCAATAGAGGTGTGGTAATTTTCAGTAAGTGTGGCAAATGAGCTTATTAGTTAAGAATGAAGGAAAATTGCCACATATATGTGATTATATGGGATTGCCACACCTCTATTGCCCACATAAGATGTGTGGCATTTGCCCCGTATTGTAGTGGTGAGT

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