SE3130004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10601
  • Fragaria vesca
  • SE3130004
  • hAT
  • Frvh1
  • LG1:14228108-14228583
  • TATGGCTA
  • TGGCTACGCAGACCCGTACCTG

Secondary structure and sequence

TSD    TIR
5'



3'
TA    TA     A    T     AATA   TCTTAAGAGTCGATAGACTCAGGGCCCAGAACCTGCATAAGGGGCCCAAATTTTTTTTCTTCTCTTTATGTGATTACATTAGTTTAGTTAAAAACAATCAAAAATAATTACAACATATCAAAAATAATTACAGCATCCAATTAGGGTGATGTTAGATTACAAAATAGAGAAATGAATATAAAATCTAACCTATTATATTACTATCATTAG
  TGGC  CGCAG CCCG ACCTG    GAG                                                                                                                                                                                                                  
  ||||  ||||| |||| |||||    |||                                                                                                                                                                                                                  T
  ATCG  GTGTC GGGC TGGAC    CTA                                                                                                                                                                                                                  
GC    --     C    C     ---A   AAAATCTGGACTCAGCTTGAAAATTTTAATCCGGGAGTTTCATATCATAGGTAAGTTAAAATAAAAGAGAAAAATTCTTTATGTGTTTTTTAAAGTGCTTGATTTTGATATTTGTATTTTAGATTGTTGTTTTTTGTAATCTTTAGGATAATTTTTAGAATAAATATGTTGTTTAGAGAATGAATCTGACGAGTAATAAGATTTTACCGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End