Plant MITE

SE3150014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10611
Fragaria vesca
SE3150014
PIF/harbinger
FrvP2
LG6:19950834-19951171
TAT
GAGCATCTCCAGCAGTATTGCTAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCGAA            C     ------------        CAATTTTTTTTT    TTTGTCAACTTTTGGGATGAATAAGGGCTCAGCAGAATGCCTAAAAAATTGCTAAATCCTAATATTGCTAAACTAAATTGACAAATTTATCAATCTCGACATAAATTGCTAAAGAGAAACATA
                     GAGCATCTCCAG AGTAT            TGCTAAAT            TAAA                                                                                                                           
                     |||||||||||| |||||            ||||||||            ||||                                                                                                                           T
                     CTCGTAGAGGTC TCATA            ACGATTTA            ATTG                                                                                                                           
                  AAG            A     TCCATTCAAACA        -----------A    TTATCAATCCTATAAATTGTTAACTTTATCGTTAACACGAGGTCGTCATTAACGATTCACATTCAATTCATTATAAAAATTGCTTAGTATTTGAATGTGCACCTATTTTTTACCTCCCTTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150014

TATACTCNGTCATNCTNCGAAGAGCATCTCCAGCAGTATTGCTAAATCAATTTTTTTTTTAAATTTGTCAACTTTTGGGATGAATAAGGGCTCAGCAGAATGCCTAAAAAATTGCTAAATCCTAATATTGCTAAACTAAATTGACAAATTTATCAATCTCGACATAAATTGCTAAAGAGAAACATATGTTTTCCCTCCATTTTTTATCCACGTGTAAGTTTATGATTCGTTAAAAATATTACTTAACTTACACTTAGCAATTACTGCTGGAGCACAATTGCTATTTCAATTGTTAAATATCCTAACTATTGTTAAATTTAGCAACAAACTTACCTATACTACTGGAGATGCTCGAA

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