SE3120015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10612
  • Fragaria vesca
  • SE3120015
  • Mutator
  • FrvM10
  • LG1:3652452-3652642
  • TATACTCNG
  • TAATTTTAGGGAAGTGAAATCCACACTCTCTAAATTGTAATCCACACTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNC   TT       ----A                C                    ----   TTTCCATTTGTGGTAACTTAAATTTTGTTTTTAGTGAC
                  TAA  TTAGGGA     GTGAAATCCACACTCT TAAATTGTAATCCACACTCC    CAC                                      
                  |||  |||||||     |||||||||||||||| ||||||||||||||||||||    |||                                      T
                  ATT  AATCCCT     CACTTTAGGTGTGAGG GTTTAACATTAGGTGTGAGG    AAG                                      
                     TT       GCATG                A                    ATAA   ATAAAAATCAGTAGTAAAAGTATTCTTCTGTTTTCAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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