SE3160018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10615
  • Fragaria vesca
  • SE3160018
  • Mim
  • FrvMi1
  • LG5:26287455-26287838
  • TATATATA
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATATAGTTCTTATC        AGTTTCGCTCTGAAATTAAAGTGTGAAGTTCCTTATTTGACTCATTTTACGGTCATATTTCGACATCTCCACCGTTCTGTTTATTGATATTAATGCATAGATCATTCTTGCAAAATTTCATTCAAATTGATGATCGTTTAGATACCGAATTAGGATAAATCAATGAACGGA
                 CAGAGTGA                                                                                                                                                                           
                 ||||||||                                                                                                                                                                           C
                 TTTAATTT                                                                                                                                                                           
                         CACACTTCAAGGAATAAACTGAGTGAAAAGCCAGTATAAAGCTGTAGAGATGGTAAGTCAAACATCTTAGTTTACGTATCTAGTGAAGATGTTTCAAAGTAGCTTAAACTTTTAGCAAACTCACAAGTATTAGCACTAAATGTGTTTGTCAAGATTAGTCTGTTCAAATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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