SE3160020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10617
  • Fragaria vesca
  • SE3160020
  • Mim
  • FrvMi2
  • LG6:22901720-22902099
  • TATATATATATAT
  • TATATATATATATGCCCGCTATGAAGCGG

Secondary structure and sequence

TSD    TIR
5'



3'
               --CC  C          ACGT                           A                        ------    CT                      CA  A                   ---    GCAATATCGATTTGAAGGTCTGGGCAACAACCTCCACCCAAAAC
 TATATATATATATG    CG TATGAAGCGG    CCGCACTGGGCTTAAAGTGTGGATGTC CTCTGTTCTTCTTCGTCTGGCGCC      GGCG  CCTCCACCCGAGCGGACACCAG  GC TCTCCGATCACTTTCTCTT   GCCG                                            
 ||||||||||||||    || ||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||      ||||  ||||||||||||||||||||||  || |||||||||||||||||||   ||||                                            T
 ATATATATATATGC    GC ATACTTCGCC    GGCGTGACCCGAATTTCACGCCTACAG GAGGTAAGAGGAGGCAGGCCGCGG      CCGC  GGAGGTGGGCTCGCCTGTGGTC  CG AGGGGCTAGTGAAAGAGAA   CCGC                                            
T              TTTT  T          ----                           G                        TTGCTG    AC                      TC  C                   GGA    TCAGGTGGCTTAAGATCAAACGGCCGCTCTAGCTGGAACAGATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End