SE3150021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10618
  • Fragaria vesca
  • SE3150021
  • PIF/harbinger
  • FrvP4
  • LG7:12239067-12239535
  • TAC
  • GGCCTCGTTTGGTTCATGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACAA              C     TTAGA      GAGAAGGGAAAGTTGTTCCTTTCCTTTGTTTGGCACACATAAGGAAAGGAAAGACTTTACTGCAATATGGGAAAATAGATGGGAAATTGGATCCTCCCACATACCATGGGATTCAATTTCCCTCATACTTTCCCAACATTAATTGCATCTTTTATATATTGTTTTAATGGATGTTATTACCAAATTATCCACAAAACTTCAGA
     GGCCTCGTTTGGTT ATGGA     AAGGTT                                                                                                                                                                                                           
     |||||||||||||| |||||     ||||||                                                                                                                                                                                                            
     CCGGAGCAAACCAA TACCT     TTCCTT                                                                                                                                                                                                           
  AAC              C     -----      TAACCAAGGAACCAGAAAGGGTACATGTACCCTTTCATTTAAAGGGAGATCAAAGGGATGCTCTACAAACCCTTGCAGCCCTTTCATTGATCCTTTACATAAAATGAAAGGAAAAATTACAAACCAAATACGTACCTATCCTTTCGTTCATTGTAACTAAATGGTTAATATAGGAATCATTATTTTATATATTATAAATTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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