Plant MITE

SE3120023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10620
Fragaria vesca
SE3120023
Mutator
FrvM6
LG4:5052048-5052240
TATACTCNG
TTATATATAGGGTGGTGTTATTAACACACTATTTTTTTGCTTTTAACACACCCCATCTAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCTCT     TAT                             T   T      C   C       GATAAGAG      ATGGA   A    A   GTCAAAATT
                      TTATA   AGGGTGGTGTTATTAACACACTATTTTTT GCT TTAACA ACC CATCTAT        TCTATC     GCA ATTC AGT         
                      |||||   ||||||||||||||||||||||||||||| ||| |||||| ||| |||||||        ||||||     ||| |||| |||          
                      AATAT   TCCCACTACGATAATTGTGTGATAAAAAA CGA AATTGT TGG GTAGATA        GGATAG     TGT TAAG TTA         
                           TTC                             -   T      T   A       -----AAA      ----G   G    A   AAATAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120023

TATACTCNGTCATNCTNNCTCTTTATATATAGGGTGGTGTTATTAACACACTATTTTTTTGCTTTTAACACACCCCATCTATGATAAGAGTCTATCATGGAGCAAATTCAAGTGTCAAAATTATAAATAAAATTAGAATGTGTGGATAGGAAAATAGATGAGGTTTGTTAATAGCAAAAAATAGTGTGTTAATAGCATCACCCTCTTTATAA

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