Plant MITE

SE3150025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10622
Fragaria vesca
SE3150025
PIF/harbinger
FrvP5
LG2:23063833-23064184
TAT
AGGCCTCGTTTGGTTCTTGGAA

Secondary structure and sequence

TSD TIR

5'

3'

TATA                T     AGTAACAATC       AAA   -    --C          -TTT     T TT   -           ATTTTCC    G  TG        T   --    AGTTGTTCCTTCCAAAATCCATAGAAAACCACTTTCCTATCTCATTTTCTTGCATTCATTACTC
    AGGCCTCGTTTGGTTC TGGAA          AGGAAAG   AGT TATT   CTTTCCTACG    GGGAA G  GAA GGAAATAAAAT       TGAA GT  GGAAAATG GAG  GGAA                                                                
    |||||||||||||||| |||||          |||||||   ||| ||||   ||||||||||    ||||| |  ||| |||||||||||       |||| ||  |||||||| |||  ||||                                                                 
    TCCGGAGCAAACCAAG GCCTT          TCCTTTC   TCA GTAA   GAAAGGGTGC    CCCTT C  CTT CCTTTATTTTA       AAGG CT  ACTGAAAA GCA  GATG                                                                
  AA                C     ----------       --A   A    ACA          CTTT     T -T   A           -------    G  --        -   AA    CAAACCATTGTGTTTCTTTTAGTAGACCTTTTAACAATTAATTTTATTATTTTATTATATAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150025

TATAAGGCCTCGTTTGGTTCTTGGAAAGTAACAATCAGGAAAGAAAAGTTATTCCTTTCCTACGTTTGGGAATGTTGAAGGAAATAAAATATTTTCCTGAAGGTTGGGAAAATGTGAGGGAAAGTTGTTCCTTCCAAAATCCATAGAAAACCACTTTCCTATCTCATTTTCTTGCATTCATTACTCACAATATATTATTTTATTATTTTAATTAACAATTTTCCAGATGATTTTCTTTGTGTTACCAAACGTAGAAACGAAAAGTCATCGGGAAATTTTATTTCCATTCTCTTTCCCTTTCCGTGGGAAAGACAAATGAACTACTTTCCTTTCCGCGAACCAAACGAGGCCTAA

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