SE3120030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10627
  • Fragaria vesca
  • SE3120030
  • Mutator
  • FrvM11
  • LG6:35503039-35503543
  • TATAATTTT
  • ATAATTTTTAGGACTAATTTCAGTTTATCCCCATCAACTTTAGGTCGATCATCATGTTAATCCATTTTCTTTCAATTTCATCAAAAACACCTCTCAACTTTTAATTTTCATCAGCCGTGTCCAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
 T    TTT                         A                          A   A                                                              ATAC      C                 TAAGAAGAAAACCAATTTTGAAGTCGCTGAGCCCACAGAAAAAGGACAAAATAGACAAATTGCATTCAATCATACCAAAATCACTAAGGTTAGAGGGT
  ATAA   TTAGGACTAATTTCAGTTTATCCCC TCAACTTTAGGTCGATCATCATGTTA TCC TTTTCTTTCAATTTCATCAAAAACACCTCTCAACTTTTAATTTTCATCAGCCGTGTCCAAAC    GTTTTT ATCCAATTCCTCCGCAT                                                                                                  
  ||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||                                                                                                   
  TATT   AATCCTGATTAAAGTCAAATGGGGG AGTTGAAATCCAGCTAGTAGTACAAT GGG AGAAGAAAGTTAAAGTAGTTTTTGTGGGGAGTTGAGGGTTAAAAGTAGTCGGCACAGGTTTG    CAAGAG TAGGTTAAGGAGGCAGT                                                                                                  
TT    TTT                         C                          C   A                                                              GAGT      T                 TCACTACTGCACTGTAGTTCTTCTTTCAGTTTAATACTTTTTTTATTGTAAAAACTGGTAAAAAGGGGATATAGTTACGTGTGAGGCATGGGTAGTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End