SE3150043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10640
  • Fragaria vesca
  • SE3150043
  • PIF/harbinger
  • FrvP6
  • LG7:1229043-1229464
  • TAT
  • AGAGCATCTCCAACAGCTTCCCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTA                        TTTTC     TTTATCAATTTTGGGGAATATTGAGTTGTTTTGTGGTCCAACAGCTTCCCCATCTCATTCCCCAAAATAGGGATGGAGAAGAAAGAGAAGCACTATTTCCCTAAATTTGCAGCAAAGCCTTTCTTCCCCAAATATTAATTATTCACGTGCTCCAACGATAAAAAAAAAAATCTAGAA
                    AGAGCATCTCCAACAGCTTCCCCA     TTGAT                                                                                                                                                                                 
                    ||||||||||||||||||||||||     |||||                                                                                                                                                                                 T
                    TCTCGTAGAGGTTGTTGAAGGGGT     TTTAA                                                                                                                                                                                 
                  AA                        -----     AGAGATTTTACCCCTTCGTTTTCGGTTTTAGAGTTTTTTTAAATACGAGGTTGAGGTTGTTGAAGAGGTAAAACCTCTAAAGCCGTAAATAATTTTGTTATTTTTTACAATATACTAACAATTATTATTGTTTTTTTTTAGTATATAAAGTAACATTGTATTTAATGGGTTATTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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