SE3120046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10643
  • Fragaria vesca
  • SE3120046
  • Mutator
  • FrvM19
  • LG1:18216518-18216947
  • TACTTACCA
  • GGGAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTACCAAAT       ---AT   AACGAAGACTCTTAAGTTGAGGATTTGTTGAGGACTTTTCGGCTTATCCCATTTTTCGATCTTATATTCACATCTTAACCGTTCAGTTTATAGGTATTTATGAGTAGATCATTTCTGCAAATTTTCAGCCATATTGAAAATCGTTAAGACATTCATAAGTGTGATTTACCAATTATGAACTTGAACGGTTC
            GGGAGCC     TCT                                                                                                                                                                                               
            |||||||     |||                                                                                                                                                                                               A
            CCCTCGG     TCA                                                                                                                                                                                               
  TAAACCATTC       AAAAA   CTCCTAGGAATTCAACTCCTGAAAAGCCAAATATCAAATTTTTTGTATAAAAAGCTAGTGTAGAACAGTAGAGTAGGCAAGTCAAAAATCTGGATATACACATCTAGTTGGGATGTTTAAAAGTCGGTTTAGCCACTAGCAATTCCATTGTTTGATCTAGTTTAATTACCTACTTAGTTTAGACAGTTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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