SE3160050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10647
  • Fragaria vesca
  • SE3160050
  • Mim
  • FrvMi6
  • LG3:13513892-13514275
  • ATAGATATATATATA
  • TATATACACTGTATATATCAGGGCCCTTCCAATGAGGGATCCCTATTTTTTGTCACTTTTAGGGATAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAGATATA      CAC                   C             CTA        -CAC           -  --------------CCCACA   ---    --- TTTGTTTTTTAATGGGTTTTGATGGCTGAGATTAAAATAAAAAATTTAACACTTATGTCAAACCTACACCGTTCAAGATCATTACAAATAA
         TATATA   TGTATATATCAGGGCCCTT CAATGAGGGATCC   TTTTTTGT    TTTTAGGGATA GG                    CCA   TTAG   A                                                                                           
         ||||||   ||||||||||||||||||| |||||||||||||   ||||||||    ||||||||||| ||                    |||   ||||   |                                                                                            
         ATATAT   ATATATATAGTCCCGGGAA GTTACTCCCTAGG   AAAAAACA    AAGATCCCTAT CC                    GTG   TAGT   G                                                                                           
               ---                   A             -AC        AATA           A  ATAAACTATTTGAAGGACTA   TTT    GTA AGGTGGCAAGTCAAACATCCACATATACTCATCTAGTAAAGACTTTTAAAAGTCTTTTAAACCACTAGCAATTCAGTAAGTTTACAAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3