SE3150051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10648
  • Fragaria vesca
  • SE3150051
  • PIF/harbinger
  • FrvP8
  • LG2:11163385-11163770
  • TAT
  • AGAGCAAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTA      A    ---------------------------------------------    ATTTTAGGTGGGTTAGATCAGTCCTCAGCTCCGGCTAATGCACTATTCATCTAAATCAGTCTTTAGTCTTTGGTTCGACGATACAACAACAAAACCAATCCGAAGACTAATTACTATTCACCTTTTATAAAAATATTTTTTATTGATAAACAA
                     AGAGCA ATGC                                             ACCC                                                                                                                                                         
                     |||||| ||||                                             ||||                                                                                                                                                         T
                     TCTCGT TACG                                             TCAC                                                                                                                                                         
                   AA      G    TTGTTTCCTAATTTTCGAACCCAACTTCACTCCTCATCTAACTTT    TTACGTGATCAACCCTTAAGTAAACACAATCGGTACCCAGGGTCGATTGGCCCCGTTCTGTATCTCGTTAGGAGTCAGGTGTCTAACCAGACCCGATTGACTTTAGTACCCCGGGCGTAACTTAGTAGGTATCGAGTAGGGCCAACGACCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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