SE3140053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10650
  • Fragaria vesca
  • SE3140053
  • CACTA
  • FrvC3
  • LG4:22330786-22330980
  • TAT
  • CACTACAACAATATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAC      A         GCCT      G        C  A      T  C  A          -A        T     ATATTTTCTCCTCATACTT
     CACTAC ACAATATTG    GGCAAA GCCACACA CT GTGTGG CA TA AGGTGTTGCA  TTCTTTTA GTGTG                   
     |||||| |||||||||    |||||| |||||||| || |||||| || || ||||||||||  |||||||| |||||                    
     GTGATG TGTTATAAC    TCGTTT CGGTGTGT GA CACACT GT AT TCTACAACGT  AGGGGAAT TACAC                   
  CAT      G         ----      A        A  A      C  A  C          AA        T     CGTTTACTCTCATAACCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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