SE3120055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10652
  • Fragaria vesca
  • SE3120055
  • Mutator
  • FrvM21
  • LG5:11326740-11327166
  • TATACTCNG
  • GGAAAATACTTGCCTCCGGACTAGTATGTACGTGTGCGTCCGGACTCTCTCTTATTTACATACATTTGCGAATGTAAATCATGATCTTAACTGTTCAAAAGTTGAATTAATCAATGAAAATCACCTCTGTAAAAAATCAATGTAAACAGAAATCTTTTGCTCAGCCGATTGTATTAAACAAAAGAACGGTTCTTGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCAAGTTATAC             CTC                                          C          G  T      C               C                      A     CTC                   C       T        G    T  T          AG       -C      AAGTTA
                           GGAAAATACTTGC   CGGACTAGTATGTACGTGTGCGTCCGGACTCTCTCTTATTTA ATACATTTGC AA GTAAAT ATGATCTTAACTGTT AAAAGTTGAATTAATCAATGAA ATCAC   TGTAAAAAATCAATGTAAA AGAAATC TTTGCTCA CCGA TG ATTAAACAAA  AACGGTT  TTGTGA      
                           |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||| |||||   ||||||||||||||||||| ||||||| |||||||| |||| || ||||||||||  |||||||  ||||||       
                           CCTTTTATGAATG   GCCTGATCATACATGTACACGCAGGCCTGAGAGAGAATAAAT TATGTAAACG TT CATTTA TACTAGAATTGACAA TTTTCAACTTAGTTGGTTACTT TAGTG   ATGTTTTTTAGTTATATTT TCTTTAG AAACGAGT GGTT AC TAGTTTGTTT  TTGCCGA  AGTACT      
                  CACATTGAA             CAA                                          A          G  T      A               A                      C     AAA                   A       C        A    T  T          AA       CT      CTAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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