SE3120071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10668
  • Fragaria vesca
  • SE3120071
  • Mutator
  • FrvM19
  • unanchored:7664063-7664505
  • TACTCAAAC
  • GGAAGCCCTTCTAGTGAGGACCTTTAAGTTAAAGACTTGGTGAGGACTTTTCGGTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCAAACTAA  A                           AAA                          CCCACC   CGATCTTATATCCACATCTTGACCGTTCAGTTTATAGGTATTTATGAGTGGATCATTTCTTCAAATTTTCAGCTATATTGAAAATTATTAAGGCATTCATAAGTGTGATTTATCAATTATGAACTTGAACGGTTCATATTTGACA
            GG AGCCCTTCTAGTGAGGACCTTTAAGTT   GACTTGGTGAGGACTTTTCGGTTTAT      TTT                                                                                                                                                 
            || |||||||||||||||||||||||||||   ||||||||||||||||||||||||||      |||                                                                                                                                                 G
            CC TCGGGAAGATCACTCCTGGGAATTCAA   CTGAACCACTCCTGAAAAGCCAAATA      CCA                                                                                                                                                 
  AATCAAACTC  C                           CTC                          ------   AATTTTCTGGATTAAAAGCTAGTGTAAAACTGTAGAGTAGGCAAGTCAAAAATCCAAATATACTCATATAGTAAAGATGTTTAAAAGTGGGTTTAATCACAAGCAATTCTATTGTTTGATATAGTTTAATTACCTGCTTGGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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