SE3120073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10670
  • Fragaria vesca
  • SE3120073
  • Mutator
  • FrvM8
  • LG7:16657410-16657722
  • TATACTCNG
  • TATTTAATAGAATTAAATTTAGTTTACCCCATTGTGGTTTAGATGTGAATTCATGTTAGTCCCTAAACTTTCAATTTCATCATATTACCCCCCGAGCTCTTGTTTTTCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNC    T                       C              T                 C     C              T        C                  GTAA   A   -    AACCCCTAAAACGTCA      G    CAAA   CAAC    CA
                  TATT AATAGAATTAAATTTAGTTTACC CATTGTGGTTTAGA GTGAATTCATGTTAGTC CTAAA TTTCAATTTCATCA ATTACCCC CGAGCTCTTGTTTTTCTG    TTT GCT TCTC                TATCAC TCAT    TTT    GTCC  
                  |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||    ||| ||| ||||                |||||| ||||    |||    ||||  A
                  ATAA TTATCTTAATTTAAGTCAAATGG GTGACACCAAATCT TACTTAAGTACAATCAG GATTT AAAGTTAAAGTAGT TAATGGGG GCTCGAGAACAAAAAGAC    AGA CGA AGAG                ATAGTG AGTA    AAA    CAGG  
                      T                       A              C                 A     A              C        A                  ----   -   C    ---------------G      -    --CG   ----    TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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