Plant MITE

SE3120078

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10675
Fragaria vesca
SE3120078
Mutator
FrvM26
LG6:37467718-37468056
TAAACTTAT
TGAAATTTGTTTAGTCCTTGTGGTTTGAAGTCGACATCTGTTCAGTCCTTGTGGTTTTATTTTAATCTGAATGGTCCTTAAAATCATGATTTTTCATCTAAATGATCTTTCCATCAATTTTTTCTGTTAGA

Secondary structure and sequence

TSD TIR

5'

3'

TAAACTTATTAGAAT      -    T    C                     C G       C    G                       C     ATC                   A  T   CA           T      ATATTTT               CATT
               TGAAAT TTGT TAGT CTTGTGGTTTGAAGTCGACAT T TTCAGTC TTGT GTTTTATTTTAATCTGAATGGTC TTAAA   ATGATTTTTCATCTAAATG TC TTC  TCAATTTTTTC GTTAGA       CGTGGCCGTTAAAGA    
               |||||| |||| |||| ||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| |||||   ||||||||||||||||||| || |||  ||||||||||| ||||||       |||||||||||||||     
               ATTTTA AACA ATCA GAATATCAAACTTCAGCTGTA A AAGTCAG AACA CAAAATAAAATTAGACTTACTAG AATTT   TGCTAAAAAGTAGATTTAC AG AAG  AGTTAAAAGAG CAATTT       GCACCGGCAATTTTT    
    TTATTCAACCC      T    T    A                     A G       T    A                       A     CAT                   C  T   AC           T      AACGACT               AATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120078

TAAACTTATTAGAATTGAAATTTGTTTAGTCCTTGTGGTTTGAAGTCGACATCTGTTCAGTCCTTGTGGTTTTATTTTAATCTGAATGGTCCTTAAAATCATGATTTTTCATCTAAATGATCTTTCCATCAATTTTTTCTGTTAGAATATTTTCGTGGCCGTTAAAGACATTGTAATTTTTAACGGCCACGTCAGCAATTTAACTGAGAAAATTGACAGAATGACCATTTAGATGAAAAATCGTTACTTTAAAGATCATTCAGATTAAAATAAAACAACAATGACTGAAGAAATGTCGACTTCAAACTATAAGAACTATACAATATTTTACCCAACTTATT

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