SE3130080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10677
  • Fragaria vesca
  • SE3130080
  • hAT
  • Frvh11
  • LG3:31043154-31043665
  • TACCTGGA
  • CCTGGAGGCAGTGGCGTAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   GG               C  ATATCTCACT   AA G    AATTTGATGAACTAGAAAATTAAATTATTTTCAGTCACTCTTTAGCGACAACACAATTTTGTTAAAAGATGACACAAACTTAATTTCAACAATATTTTTGTCTATCATTATCATCTCGAATAACTTTGGATTAGAATTTCATGCANNNNNNNNNNNNNNNNNNNNAGATAATGCATGTTGATGTATGGTAAACATTAATGTGTTGTTTCCATT
  CCT  AGGCAGTGGCGTAGC AG          TAG  T GTCA                                                                                                                                                                                                                     
  |||  ||||||||||||||| ||          |||  | ||||                                                                                                                                                                                                                      
  GGA  TCCGTTACCGCATCG TC          TTT  T CCAA                                                                                                                                                                                                                     
     GG               A  -GATCCCCCG   -- -    GTTAACTTGGGAGAGTTTAAAAGTTTTTCTCATTAATCAGAAGTAAACATAACCTATAATCACCTTTATTTTGTATTTAACTGGGAAGAAGAGATTATTTAAGAATTAATCAGAATTTATAAGAAGTTGTTATTACCTTACTTTATTTTTAAATATGATAAGTTTATGAATTAGGTTAATTATGTTTATCACAATTCCCAAAAATGGAATGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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