SE3160085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10682
  • Fragaria vesca
  • SE3160085
  • Mim
  • FrvMi3
  • LG4:9973276-9973709
  • TATATA
  • TATATAGGATTTTTCTCAGTTGCGGACGTCCGCACCAATTTTTTGGTGCGGATTTCCATTTTTGAACCACTTTCCGATCGAATTTCCTCATCTCCACCATCTAGTATCTAGATAATATTGTGTAGATCATCTCTGCAAATTTTCAGCCAATTTGGTGATCATTCAGGCCCTCAAACTCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
          G A        A             G       -T                       GA         C                       A                                        T                    A  C                -AAA   AATGGACAGACTGAATTCT
    TATATA G TTTTTCTC GTTGCGGACGTCC CACCAAT  TTTTGGTGCGGATTTCCATTTTT  ACCACTTTC GATCGAATTTCCTCATCTCCACC TCTAGTATCTAGATAATATTGTGTAGATCATCTCTGCAAA TTTCAGCCAATTTGGTGATC TT AGGCCCTCAAACTCGA    ACA                   
    |||||| | |||||||| ||||||||||||| |||||||  |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    |||                   G
    ATGTAT T GGGAAGAG CGACGCCTGCAGG GTGGTTG  AAAACCACGCCTAAAGGTAAAAA  TGGTGAAAG CTAGCTTAAAGGAGTAGAGGTGG AGATCATAGATCTATTATGACACATCTAGTAGAGACGTTT AAAGTCGGTTAAACCACTAG AA TCCGGGAGTTTGAGCT    AAG                   
ATAT      G C        C             A       CC                       -A         A                       C                                        T                    C  T                CAAA   ACCATACTTGTGTTGGCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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