SE3120086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10683
  • Fragaria vesca
  • SE3120086
  • Mutator
  • FrvM12
  • LG6:21831837-21832284
  • TACTCTCTT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCTCTTTCGGAAAATTCTACAA         -- C TGTGAATGATGCAATACATCAACTTTGTAAATCGAGTCCTCAAACTAGTAATATTAGTCATCGAAGTTATAATATGAGTCTTTAAAGTTGTAAAATTTTCTAGTTACAACATTAGTAATCATGTATCCTTAAAGTGGTAAAATATGTACTTAAAGTGGCAATTGAGTCCTCAAAATGATTAAAAAAAAGTTGTTACA
                         TGTGTTGAT  G A                                                                                                                                                                                                     
                         |||||||||  | |                                                                                                                                                                                                      
                         GGGAGAGAA  A G                                                                                                                                                                                                     
                    CTGTT         TT - TTTCTCTTTCTCTCCCCATTCCAATCCCACACAATTACTTAGACTACGTAGTTAAAACAGAAGTTCAACATTTTACTCAGGACTTTCATCATTATAATCAGGAGTTTCAACATTATACTAAGCAATTTCAACATTTTTTTTAATCAACGTTGTAATCAGTAGTAAACAAGAATCTCACCATTAACTCAGGAGTTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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