SE3160093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10690
  • Fragaria vesca
  • SE3160093
  • Micron
  • FrvMi2
  • LG4:2541395-2541788
  • TATATAT
  • TATATATATATAGAGGATGAGAAGCGGACGTCCGCACTCGGCTTAAAGTGCGGACGTCCGTCCGTTCTCCACCCTCCGGCGCCGGCGACGGCGTGCCTTCACCCCAGAAGACTCTAGCAGCGTCCCCGACCACTTTCCTTCCCCGGCGAGTCCGTTTTTTTCCAGTTTTCCGGCGAGATCGACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
               --A     A                 T    -                             C                               C                              T           C                        G        ------      AT
  TATATATATATAG   GGATG GAAGCGGACGTCCGCAC CGGC TTAAAGTGCGGACGTCCGTCCGTTCTCCA CCTCCGGCGCCGGCGACGGCGTGCCTTCACC CAGAAGACTCTAGCAGCGTCCCCGACCACT TCCTTCCCCGG GAGTCCGTTTTTTTCCAGTTTTCC GCGAGATC      GACTTT  
  |||||||||||||   ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||      ||||||   
  ATATATATATGTC   CCTAT CTTCGCCTGCAGGCGTG GCCG AATTTCACGCCTGCAGGCAGGCAAGAGGT GGAGGCCGCGGCCGCTGCTGCGCGGAGGTGG GTCTTCTGAGGTCGTCGCAGGGGCTGGTGA AGGAAGGGGCC CTCAGGCAAGAAAAGGTCAAAAGG CGCTCTAG      TTGAAG  
AT             CGG     A                 -    G                             A                               T                              T           A                        A        TAAGTT      TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End