SE3120096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10693
  • Fragaria vesca
  • SE3120096
  • Mutator
  • FrvM19
  • LG2:23845651-23846092
  • TATACTCNG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCCTT     G GTTCGAATGAGGACTATCTTGTTGATGACTAGTTGAAGACTTTTCTCTTTAATGGTTTATTACATCCACTTTTCAATCACATTTTTCCATCTCAACCGTTTAGTTTTTAGGTCTATATAAGAAGATCACTTATACAAATTTTCAGTCAAATTGGTGATTGTTAAGGAATCGAACTAAATCAAATCAGTGGGCGATCCAAATCTGTCAAACAA
                      GGGAG G                                                                                                                                                                                                                    
                      ||||| |                                                                                                                                                                                                                    G
                      CGTTA T                                                                                                                                                                                                                    
                     T     - TTGTATGATGCCCTCACCAAGATTACTCCTGGTAGAACAACTCCTGATCAATTTCTGAAGAAGCAAAGTAGGGCAAAAACTAGTGTATAAGTGTAGAGTTGGCAGATCAAACATCTATATATACTCATCTAGTAGAGATGTTTAAAAGTAGGTTTAACTTTTAGCAATTCTGTAAATATTTACACTAAATGGCTAATATTTGAACTTGCCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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