SE3120099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10696
  • Fragaria vesca
  • SE3120099
  • Mutator
  • FrvM31
  • LG3:3657218-3657934
  • TAAATCTAC
  • GGGAAAATTTTAAGAACAATACATGACAAATGATCTACTCTTAATTTTAATGTTTCAAGTTTTAAAACAATCATAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATCTACAA                CAA             A      C    T   AA   T                        ATACA   ACTTCTAATCTCAACCAAAAACATGTACATGTCGTTATGTCTTTCATGATCTTATGTGCTTTCCGTTACAATTTGAGGGACAAATCTGTCACTCCTTAATTTAGCAGTAATAAATTATTATAATTAATAATTACTAAGGAGAGAGAACGTGAGAGAAATCAAAAATATCCAATTCTTATTGCTGAACTAATAATAAATTTTTTGAGGAGCAGTAAAGTCATTTTTGAGTATAGAAGATCCAATTCTCATTGCTAAACCGGTAACA
           GGGAAAATTTTAAGAA   TACATGACAAATG TCTACT TTAA TTT  TGT TCAAGTTTTAAAACAATCATAAAG     AGA                                                                                                                                                                                                                                                                         
           ||||||||||||||||   ||||||||||||| |||||| |||| |||  ||| ||||||||||||||||||||||||     |||                                                                                                                                                                                                                                                                          
           CCCTTTTAAAATTCTT   ATGTACTGTTTAC AGATGA GATT AAA  ACA AGTTCAAAGTTTTGTTAGTATTTC     CAC                                                                                                                                                                                                                                                                         
  AACATCTAA                ATC             C      A    T   CC   T                        -----   GTACTGTAATCTTAGTACTGTGTAAAAATCATGTACTGCAGTAATTGAGATATATTAAAGAATTAAAAGTTTCCCACTAAAGCCCAAAAGAGGTAAGAGGTAAAAGAAATATAAACAAAATGAGAAAAAGATAAATATATATATATATATAAAAAAAAAAAATTAAAACAATCGAATCTGGTATTAGAATTACTGAAACAATAGACGTTCATCTAGTGAGATAATGTAAAAAACAAATTAAAACCAGAAGTTCTTTAACAACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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