SE3130102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10699
  • Fragaria vesca
  • SE3130102
  • hAT
  • Frvh13
  • LG1:4612291-4612912
  • TATACTCN
  • TTAATCCTAAGTTGCATGGACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTT    TC   A       --          ACGGACACGGCACGACACGACACGGCGACATGGTAAAACTTAAAAACTGAGTTTCCGACACGGCAAACAAAATTATATATTTATGTATTTTTAAAAATAAAAATATACTAAAATATGAAATAAGTTCATTACATACCAAATAAAGTTCTAAATTCAATATATTTCATAACCATAAGAAATAAGTCAAGTGCATAACTAATAATATTAAAAGCAGCAGACCTCTAGCACTTAAAACATAACATTAAAGAAAAACAAACTTGAGCAGTAGTTTGTTTTTAAAC
                     TTAA  CTA GTTGCAT  GGACACGGAC                                                                                                                                                                                                                                                                                         
                     ||||  ||| |||||||  ||||||||||                                                                                                                                                                                                                                                                                          
                     AATT  GAT CAACGTG  CCTGTGAGGT                                                                                                                                                                                                                                                                                         
                   CT    TT   A       CG          GTGGGGACCTCACAGCCTGCTGTGCGGCTGTGCTGTTTTATGCACAGGCTTTTTCAATTGAAAAACCTGTGCAGAGCCTGTGTAACTGGCCGGGGTTGTGTTGTAACACTGTGCGGTGCAGTTGCAAAGTATGAAAAAAAATATTTTTTTTCCTGGATTTAAAAGATAAATAAAATATAATCTAGTTAATACCTTATTATTCAAACCTACTTAATACCTATACTATTAATATAATCAAGTAGAAGAACAGATAATCCACGATGACACGATCTCTAACGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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