SE3150105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10702
  • Fragaria vesca
  • SE3150105
  • PIF/harbinger
  • FrvP13
  • unanchored:3465777-3466219
  • TAT
  • AGAGCATCTCCAACAGCTCATGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTA       CTC         A    AAACTAGAA    -       T       AAAA  TCATTTTTTGGCTCCAACAACTCATGTAAAGGATCCTCTATAATACAAAATGTGAGATGAGAGAGAAACATATCCTCTAAATCTATAAAATTCTTAAAAATTTGTATCTTCATGTAAACTTTATTGCTTGCCTTTTAAAATTTATTCTCTTTCTTCAAAAAAGAAC
                     AGAGCAT   CAACAGCTC TGTA         TAAT CTCTATT TGGAGGA    CA                                                                                                                                                                      
                     |||||||   ||||||||| ||||         |||| ||||||| |||||||    ||                                                                                                                                                                       
                     TCTCGTA   GTTGTCGAG ATAT         ATTA GAGATAA ATCTCCT    TT                                                                                                                                                                      
                   AA       AAA         A    --------A    A       T       --CA  TAGTGTTTTAAAGATTTGCTTTTATTTTAGTTGAGATTGTCGAGCAGATAAGATAATATGTTTAATTTACTAAAAGACATATTAAATTACTTAGATATATTTATAATATATAAATAATATTAGTTTGGGGTTTGAGTACAATTTACAAAATTAAAATACTACAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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