SE3120107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10704
  • Fragaria vesca
  • SE3120107
  • Mutator
  • FrvM32
  • LG3:6607019-6607711
  • TATAATCAA
  • GAGAAATTTTAAATACACACCTTTAATCTCTTAATACACACCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAATCAATT                           C                 A      T  GTTTCTATTAAAATTTTGTAGGTAAGTTAAATAACCAAAACAGACATCTATTATTAAAAAAATAAATAAATAACTCTAGAAGTATTCTTTTCAACGTCTTCTACCCTAAAATCGTCGAAAACATGTCTTCTCCCCTAACCCCAACTCTTCTCCACAATTCATTTGGGTTGTCTTTTTTTTTTTTGTATCTGTATCAGCTTTAGTTTGATCTTGCATATCATATTGTCGAGTGCTGCATCTTTATCATGACATGTTTTATCGAATAATAGCTATCTATGTTCAA
           GAGAAATTTTAAATACACACCTTTAAT TCTTAATACACACCTTT TTATTT AT                                                                                                                                                                                                                                                                                           
           ||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||                                                                                                                                                                                                                                                                                            
           CTCTTTAAAATTTATGTGTGGGAATTA AGAATTATGTGTGGGGA TGAATT AT                                                                                                                                                                                                                                                                                           
  TTAACTAAT                           T                 A      -  GTGGTGGATAGTTCAAAAAGTAAAGTCATAATATGAATTATGTGTAGGGTTTGACGGATTTTACGGGAATTAAATACTTTATAATATAATAAATTATATTAATTACATATAAATGGTAAACCATGGATAAAAATGTATAATAAAGCAGATTAAAAACAATCTTTAAAAACCAATAGTAGTAAGTTAAATATTAGTTTACTAATAACAATATAGGGTTGAGGTTTAGTGGTTATGTTCAAAAATTTTAAGTGTGCGATCATCTTGACATCTTCATGTCATCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3