SE3120108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10705
  • Fragaria vesca
  • SE3120108
  • Mutator
  • FrvM26
  • LG5:13246590-13246929
  • TAAAAATTA
  • GGGTAAAATATTGTATAGTCTTTATGATTTGAAGTCAACATTTGTTCAGTCCTTGTGGTTTTATTTTAATCTGAATGGTCCTTAAAGTCACGATCTTTCATCCAAATGGTCATTCCGCCAATTTTCTCAGTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAATTAAA    -A    A    A        A  A         A          A  -C                            C          C   C          A  G CA     C       C  A    AATTGA        C       A  TAC
           GGGT  AAAT TTGT TAGTCTTT TG TTTGAAGTC ACATTTGTTC GT  CTTGTGGTTTTATTTTAATCTGAATGGT CTTAAAGTCA GAT TTTCATCCAA TG T  TTCCG CAATTTT TC GTTA      TGACGTGG TGTTAAA AT   
           ||||  |||| |||| |||||||| || ||||||||| |||||||||| ||  |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| || |  ||||| ||||||| || ||||      |||||||| ||||||| ||    
           CTTA  TTTA AATA ATCAGAAA AC AAACTTCAG TGTAAACAAG CA  GAACACCAAAATAAAATTAGACTTACCA GAATTTCAGT CTA AAAGTAGGTT AC A  AAGGT GTTAAAA AG TAAT      ACTGCACC GCAATTT TA   
  AAATTAAAA    AC    -    A        C  C         C          -  AT                            A          A   A          C  G TA     A       A  A    CTTATG        A       C  TAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End