Plant MITE

SE3120109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10706
Fragaria vesca
SE3120109
Mutator
FrvM14
LG4:9199243-9199442
TATACTCNG
TGAATTTTAGGGAGAGCTTCCAATGAGGACCTTATAATGAGGACCAAGTGAGGACTTTGAAATGAATGGTTGGAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCA    T    -           C                      C              G                AAAATGCA  T  GAATTAGAAAATATC
                   TGAA TTTA GGGAGAGCTTC AATGAGGACCTTATAATGAGGA CAAGTGAGGACTTT AAATGAATGGTTGGAT        CA GG               
                   |||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||        || ||                
                   ATTT AAGT CCCTCTCGAAG TTACTCCTGGAATATTACTCCT GTTCACTCCTGAAA TTTACTTGCCAACCTA        GT CC               
                       T    A           A                      A              G                --------  T  AAAACTGAAAATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120109

TATACTCNGTCATNCTNCATGAATTTTAGGGAGAGCTTCCAATGAGGACCTTATAATGAGGACCAAGTGAGGACTTTGAAATGAATGGTTGGATAAAATGCACATGGGAATTAGAAAATATCAATTAAAAGTCAAAACCTTGATCCAACCGTTCATTTGAAAGTCCTCACTTGATCCTCATTATAAGGTCCTCATTAGAAGCTCTCCCATGAATTTTA

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