SE3150110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10707
  • Fragaria vesca
  • SE3150110
  • PIF/harbinger
  • FrvP14
  • LG6:17261208-17261731
  • TAT
  • AGGGCATGTTTACTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATA                        AGA   ----------G GAG   T  AATTGATTCCGGAATGGGTGAATTCTAGCGTTTACTAACATGTCAAGGTATTGGAATGAATGTGGGTCCCACTTGCTTATCAGGAATCGATTCTTGACGAAACCCCTTATTCGATACCCAAGAGGGGAGATGGGTATCAGAATCAAGGTAATGGAATCAACTTTTTCTCCCAAAAATATTTTCACATGATTATAATATTTCTAAATTACCCAACCCT
    AGGGCATGTTTACTAACCTAGAAT   ATT           A   TGG GT                                                                                                                                                                                                                         
    ||||||||||||||||||||||||   |||           |   ||| ||                                                                                                                                                                                                                         A
    TCCCGTGCAAATGATTGAACCTTA   CTT           T   AGC TA                                                                                                                                                                                                                         
  AA                        ---   TTAATAGTATT ---   -  TAGTTATTGTTAGCTATAGTTGTTCTTGGCCATACTCTTATAAAGCATGGTAAGATGACAAATGAATGGTTTTCTTTAGTTTTGTACTTACTTTGATTAATGCTAACTACAACAAATGAATAGTATACCTTAGCCTTAATTTTGATCGATCAAACTAATGATTTTATGGGGATGTTATTTACTTAAATTTTATGGGGATTTTATATTATATATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3