SE3120111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10708
  • Fragaria vesca
  • SE3120111
  • Mutator
  • FrvM33
  • LG3:26758475-26759203
  • TATACTCNG
  • ATATCATATGAGGAAATTTTTCAAATGGTGTCCCAACTTAAGCTCATTCATCATTTTGACATCTCAATTTTGAAAACTATAATAATGTACCTCAACACTTAAACCTAATCTAACATTAGTTCCTTCCGTGATTAACACCATTAAGTTCGACTTTATTTATGGGCAAAATTGTTTTTTCATGTTTTCCCTCCCCAAATCT

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNC    C                               C     -  C                                   A      -        C        C          T                 A   CCA       C      A                                C   C       ---       --------- C  AA CATTTCCCTTCAGAATAATGTACATTTTCAATCAGTATCAGAATTTGTGGTGAGCCATGTGTTGACTGCATATAAAAATTAAAAACATCTAGAAATTATAATACACCATTGGCCATTAATATCCATCATTAAAAGTAGTTTTTGCA
                  ATAT ATATGAGGAAATTTTTCAAATGGTGTCCCAA TTAAG CT ATTCATCATTTTGACATCTCAATTTTGAAAACTAT ATAATG TACCTCAA ACTTAAAC TAATCTAACA TAGTTCCTTCCGTGATT ACA   TTAAGTT GACTTT TTTATGGGCAAAATTGTTTTTTCATGTTTTCC TCC CAAATCT   TTTCTCT         C AC  A                                                                                                                                                  
                  |||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||||| ||||||||||||||||| |||   ||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||   |||||||         | ||  |                                                                                                                                                  A
                  TATA TATACTCCTTTAAAAAGTTTACCACGGGGTT AATTC GA TAAGTAGTAAAACTGTAGAGTTAAAATTTTTGATA TATTAC ATGGAGTT TGAATTTG ATTGGGTTGT ATCAAGGGAGGCACTAA TGT   AATTCAA CTGAAA AGGTACCCGTTTTAACAGAGAAGTACAAAAGG AGG GTTTAGA   GTCAACT         A GA  G                                                                                                                                                  
                      C                               C     A  -                                   C      C        A        A          T                 C   ATC       C      C                                A   T       ACA       TAATCTCAA -  -- CTGGACTTCTATAGTTGATACTTACATTCAGGACAATGGATCAATAGAAACTAATAAGATAATTCATATATACAAAGTACTTGAAGACATGACCTACGTTTTACGTAAAATTAGTTACAATTAATTAAGAAAGAGAGTGGCCACCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End