SE3160116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10713
  • Fragaria vesca
  • SE3160116
  • Micron
  • FrvMi7
  • LG4:22189176-22189625
  • ATATACC
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATACCATATGAGAAGAC      CCTTCTACTAAGGGATCCCTTTTTTTGACATATATGAGGGATCAAGCATTAGACCTACTTTTCAATCACATTTTTCAATTTTAACCGTTCAGTTTTTAGGTCCTAATATGTAGATCACTTCTGCAAAATTTCATCCAAATTGGTGATCGTTAAGGTGTTCAAAACTGCGAATTAAAATTATAGGCATGAACGGTTCAGGTTTGGCAG
                   CAGGGC                                                                                                                                                                                                               
                   ||||||                                                                                                                                                                                                               A
                   TATTCT                                                                                                                                                                                                               
                  A      AACAGAAGAGTAGTCCCGGGAAGATGATTCCCTAGGGAAAAAAACTGTATATACTCCATAGTTCGTAATCTGGTTGAAAAGTTAGTGTATAGTTGTAGAGGTGGCAAGTTATAAATCTACATATATACATCTAGTAAAGACGTTTTAAAGTAGGGTAAACCACTAGCAATTCCGAAGCTTAATTGACTTTAGTTAACTACCTAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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