Plant MITE

SE3120122

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10719
Fragaria vesca
SE3120122
Mutator
FrvM10
LG5:18406649-18406835
TATACTCNG
AGGGGATGTGAAATCCACACTCCCCAAATTGTAATCCACCCTCCCATTTTCTATTTTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCTTCTTT      T          C        A            C                  A  CATC        AAGAA   AAAAGTTAA
                        AGGGGA GTGAAATCCA ACTCCCCA ATTGTAATCCAC CTCCCATTTTCTATTTTT GT    ATTTTGAT     GAC         
                        |||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||| ||    ||||||||     |||          
                        TTCCCT CACTTTAGGT TGAGGGGT TAACATTAGGTG GAGGGTGAAAGATAAAAA CA    TGAAATTA     CAG         
                  GATTTC      T          A        A            T                  C  ---T        --AAA   GAATAACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120122

TATACTCNGTCATNCTNCTTCTTTAGGGGATGTGAAATCCACACTCCCCAAATTGTAATCCACCCTCCCATTTTCTATTTTTAGTCATCATTTTGATAAGAAGACAAAAGTTAAGTCAATAAGGACAAAATTAAAGTTACCAAAAATAGAAAGTGGGAGTGTGGATTACAATATGGGGAGTATGGATTTCACTTCCCTTCTTTAG

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