SE3160123

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10720
  • Fragaria vesca
  • SE3160123
  • Micron
  • FrvMi6
  • LG1:9445071-9445507
  • TATATAT
  • TATATATAGACAGGGCCCTTCCAACGAGGGATCTCTTTTTTTGACATATATGAGGGATGGGAGATTACACCAACTTTTCGATTCTATTTTTGAATCTCTACCGTTCAGTTTGTTGGTCCTTATATATAGATCAATTCTGCAAATTTTCAG

Secondary structure and sequence

TSD    TIR
5'



3'
        G                                                    A                C    C  TTT  GA                T   T   C  T    --A       A                CCAA                AT  CGAA        -------------AATCA       AAC  AA   G
TATATATA ACAGGGCCCTTCCAACGAGGGATCTCTTTTTTTGACATATATGAGGGATGGG GATTACACCAACTTTT GATT TA   TT  ATCTCTACCGTTCAGT TGT GGT CT ATAT   TAGATCA TTCTGCAAATTTTCAG    TTTGGTGATCGTTAAG  GT    CAAGATTA                  ATGAACG   CA  TCT 
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||   ||  |||||||||||||||| ||| ||| || ||||   ||||||| ||||||||||||||||    ||||||||||||||||  ||    ||||||||                  |||||||   ||  ||| C
ATATATAT TGTCCCGGGAAGGTTGCTCCCTAGGGAAAAAAACTGTATATACTCCCTACCC CTAATGTGGTTGAAAA CTAG GT   AG  TAGAGGTGGCAAGTTA ACA TCA GA TATA   ATCTAGT AAGACGTTTAAAAGTC    AAACCACTAGCAATTC  CG    GTTTTGAT                  TACTTGC   GT  AGA 
        G                                                    C                A    T  TTT  TG                T   -   A  -    CTC       G                TTTA                --  -TAA        GCTAAAAATTAATATTCG       CAA  CC   C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End