SE3120127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10724
  • Fragaria vesca
  • SE3120127
  • Mutator
  • FrvM18
  • LG1:6685223-6685383
  • TATACTCNG
  • AGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCCTATAAA    AAAAT   A     A              A    C                       T  AAAA T AA
                         AGCG     TAT CAGCG CACCTGGGTGCGCC CGCA CCGTCCATCTCTGCCGTCCATTT GA    G C  
                         ||||     ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||| ||    | |   
                         TCGC     ATA GTCGC GTGGACCCACGCGG GCGT GGCAGGTAGAGGCGGCAGGTAAA CT    C G  
            CGAAAATATCCTC    -----   A     -              C    A                       -  GCGC T AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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