SE3130128

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10725
  • Fragaria vesca
  • SE3130128
  • hAT
  • Frvh18
  • LG3:14825370-14825576
  • TATACTCN
  • CCTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNN  --TT   TTTCG               -AG  -   C  -   ---  --    GGATAGCCGGTGACTAGCACTTAGGCGGCTTAATCGAGAGATTAATCGGTTTT
                  CC    TGG     TCAATGTTCTAAAAA   TT AGG GC TAG   TC  GGGC                                                     
                  ||    |||     |||||||||||||||   || ||| || |||   ||  ||||                                                      
                  GG    ACT     GGTTACAAGATTTTT   GG GGA TC CGG   AT  GGGG                                                     
                TT  TTTT   --TTG               AAA  A   -  T   CTA  TA    CGGATCCCGGATCCGCGATCCACCACGAAGTGAGAAAGGCAGATCTCTCGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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