SE3130130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10727
  • Fragaria vesca
  • SE3130130
  • hAT
  • Frvh20
  • LG6:1075621-1076401
  • TATTAATT
  • TAATTATTAGGGCTGGGCACTTAGTACCGGAATTCCG

Secondary structure and sequence

TSD    TIR
5'



3'
TAT      T             TTA T  C   -ATT   ------------         CG     GTCCCGAAAGTTAACAGGACGGGACGAGATAGGTTTTGAAAATAACAATCTCGTCCCGTCCCGTCCCGTTTTAACATTACCATAACGGGACGGGACGAGACGGGACTATCCCGAAAAATCCCGTCCCGTCCCGTAATATTAGAATACTTGATTTTATTCATTTTATACTTGATTTTTTTAGGTTGCATGGTGTTACAATGCATTCAACCACACTTAATTTGGTCTAAAATAATACTTTTAGTTTCATTCATGTTCTTTTTTTTTTGCTTGTGTGATTTTGGATATTTTTAGTTGTTGTTTGAGGGTTAATTTTTAATGTGAGATGTTTAGTACT
   TAATTA TAGGGCTGGGCAC   G AC GGA    CCG            GTCCCGTAC  GTCCC                                                                                                                                                                                                                                                                                                                                              
   |||||| |||||||||||||   | || |||    |||            |||||||||  |||||                                                                                                                                                                                                                                                                                                                                              T
   ATTAAT ATCCCGACCCGTG   C TG CCT    GGC            AGGGCAGGG  CAAGG                                                                                                                                                                                                                                                                                                                                              
  T      T             --C C  C   GCCC   CCTAAACCACTT         --     CTTTTATTTTCTTGCCCTGCCCTTCCACAAAAATTTTTAGACAGGGCATGTAGGGCTAGGGCTGTTTAATAATAATAAAAAAAAGTTCTTGTTTTATTAACTAATAGTTTGTGGTGGTGTCCAACTCTTTGAAGTTCGTAAGTTTACGAGGTAGTGTTAACTAGTCACATACTTTAAAAGCTGTAAAAATACGACAAACCTTGTTGTAATTACTTTAATTACCTTTTTTTTTATAGGTTTTTGTGTATTTGTTTTTTTTTTTTTGTAACTACTTTAATCTTCATGATTTTAGTTGTTGTATCCACGTATCCACGAATTAATGTAGGGTGAAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End