SE3160132

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10729
  • Fragaria vesca
  • SE3160132
  • Micron
  • FrvMi3
  • LG5:22445647-22446094
  • TATATAT
  • TACATATATGTACAGCCCTTTTCAAATAAGGACCTCCTTACCTTAGTTAAGTAAGGATTTCCTTAATTTGACCTACTTTCTAATCATATTTTCTCATCATAGCCATTCAGTATTTAGATATACATGATTAGATCATCTCTACAAATTTTCAGCTAATTTAGTTATCGTTAAGGTATCGAAAATGT

Secondary structure and sequence

TSD    TIR
5'



3'
TATATATATATG               CC  TT   AA               C         -TAA       C  A              CTA                A     A                 C    T                            T  A  T  C          -         ATTAAATCAA    C    TAAAT T     T
            TACATATATGTACAG  CT  TCA  TAAGGACCTCCTTAC TTAGTTAAG    GGATTTC TT ATTTGACCTACTTT   ATCATATTTTCTCATC TAGCC TTCAGTATTTAGATATA ATGA TAGATCATCTCTACAAATTTTCAGCTAA TT GT AT GTTAAGGTAT CGAAAATGT          TGAA GAAC     C GTTCA 
            |||||||||||||||  ||  |||  ||||||||||||||| |||||||||    ||||||| || ||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| || || || |||||||||| |||||||||          |||| ||||     | ||||| C
            GTGTGTGTGTGTGTT  GA  AGT  ATTCCTGGAGGAATG AATCGATTC    CCTAAAG AA TAAGCTGGGTGAAA   TAGTGTAAAAGAGTAG ATCGG AAGTCATAGATCTATAT TACT ATCTAGTAGAGATGTTTAAAAGTCGGTT AA TA TA CAATTCTGTA GTTTTTACA          ATTT CTTG     G CAAGT 
                           AC  CT   CC               A         TATG       -  A              AAC                A     C                 A    C                            T  C  T  C          A         CTAAATCTCA    T    --CAT C     T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End