SE3160133

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10730
  • Fragaria vesca
  • SE3160133
  • Micron
  • FrvMi8
  • unanchored:8628525-8628915
  • TATATAT
  • TATATATATGTACAG

Secondary structure and sequence

TSD    TIR
5'



3' 
               TCTGTTTCT             ---A     GTTTTCCGTAAGGATTTCCACCGTTTCTCCACCATTCCAACGCCGGAGAAGCCGTTTTATTCTCCCCGACGTGATCCCAGACCTCCCCGACGGTGTTGGAATGAAGAAGAAGGCCGGAGAGATCGCGATCAGAGGTCTGTGCAGCAATCT
TATATATATGTACAG         GGTGCGGACGTCC    TATGG                                                                                                                                                      
|||||||||||||||         |||||||||||||    |||||                                                                                                                                                       
ATATATATATATGTT         CCACGCCTGCAGG    CCTAA                                                                                                                                                      
               CTTAATAAT             CATG     AGACGGCAAAAAGGTGGTAAGATCGCGGCCGCTGCAACAAAGAAGAGGAGCCGTACTAGGGTCTGGAGGGAGCTGCCACAACCTTACTTCTTCTTCCGGCCTCTCTAGCGCTAGCCTCCAGGTGGTACTAGCCAGCACTTCAAGACTCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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