Plant MITE

SE3160135

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10732
Fragaria vesca
SE3160135
Micron
FrvMi6
LG3:24798406-24798783
ATATATA
ATATATATATAT

Secondary structure and sequence

TSD TIR

5'

3'

            GCACATACACACAG    C  C        GA    A      TA       G AA     ---------ACAA         -     TGTTTTTTAATGATCTTGGATGGTTGAGATTAAATAATAAATTCAACACTTTCTGACAAACATGAACCGTTCAACTTTATTAAAAGTAAATCAA
ATATATATATAT              GGCC TT TAATGAGG  TCCT TTTTTT  TTTATTT T  GGATA             CTCACCATT AGATC                                                                                              
||||||||||||              |||| || ||||||||  |||| ||||||  ||||||| |  |||||             ||||||||| |||||                                                                                              A
TATATATATATA              CCGG AA GTTACTCC  AGGA AAAAAA  AAATAAA A  CCTAT             TGAAGGGCT GTATT                                                                                              
            --------------    T  A        AT    -      TC       G CC     CCGATAAACTACT         A     TTAGTGTAGAGATGGTAAGTTGAACATCTAGATATACTCATCTAGTGAAGGTGTTCAAAAATTTTCTAAACCACTAGTAATTCAGCAGGTTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3160135

ATATATATATATGCACATACACACAGGGCCCTTCTAATGAGGGATCCTATTTTTTTATTTATTTGTAAGGATAACAACTCACCATTAGATCTGTTTTTTAATGATCTTGGATGGTTGAGATTAAATAATAAATTCAACACTTTCTGACAAACATGAACCGTTCAACTTTATTAAAAGTAAATCAAAGTTTTGGACGACTTAATGATCACCAAATCTTTTAAAAACTTGTGGAAGTGATCTACTCATATAGATCTACAAGTTGAATGGTAGAGATGTGATTTTATGATCGGGAAGTTCATCAAATAGCCTATCCCCAGAAATAAACTAAAAAAAGGATACCTCATTGAAATGGCCATATATATATAT

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