Plant MITE

SE3140138

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10735
Fragaria vesca
SE3140138
CACTA
FrvC2
LG6:34296131-34296331
TAT
CACTACCATAATATGGAGTAAAGGCCACACATCTTATGTGGGCAATAGAGGTGTTGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCAAC                             C  C  A                        CCCATAAAA   CA  TA     CAATTTTCACTCATTCTT
                      CACTACCATAATATGGAGTAAAGGCCACA AT TT TGTGGGCAATAGAGGTGTTGCAAT         TCT  TA  TGTGG                  
                      ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||         |||  ||  |||||                   
                      GTGATGGTGTTATACTTCGTTTCCGGTGT TA AA ACACCCGTTATCTCCACAACGTTA         AGA  AT  ACACC                  
                   CAA                             A  A  C                        --------A   AC  TC     ATTTATTCCCATAATCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3140138

TATACTCNGTCATNCTNNCAACCACTACCATAATATGGAGTAAAGGCCACACATCTTATGTGGGCAATAGAGGTGTTGCAATCCCATAAAATCTCATATATGTGGCAATTTTCACTCATTCTTTACTAATACCCTTATTTACCACACTTACAAGAAATTGCAACACCTCTATTGCCCACACAAAATATGTGGCCTTTGCTTCATATTGTGGTAGTGAAC

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