SE3150139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10736
  • Fragaria vesca
  • SE3150139
  • PIF/harbinger
  • FrvP7
  • LG2:8723275-8723667
  • TAT
  • AGAGCATCTTTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTA      T        -    T -   A       GTTAAATTTT   -----CAA     CTAAAATGTCATTTTGGCTAGTCACTTTAGAAACGCGGCTGCATCAATGCTCTCTATTTTAGCTAGCATTACATAAACATTATTCTTCAAATAAAGATTAAATAGTTTAAATATATTTATATATCACGTAAAATATCTTACA
                    AGAGCA CTTTAGCA ATGC A GCC TTTTTGA          AGT        ATTAG                                                                                                                                              
                    |||||| |||||||| |||| | ||| |||||||          |||        |||||                                                                                                                                               
                    TCTCGT GAAATCGT TGAG A ATA AAATCGA          TCG        TCTCG                                                                                                                                              
                  AA      T        C    - T   -       -------AAA   ATAAAATC     CACAAATCAAAAAAAAAAAATATAAAAGCCTCGAGGTCGTCTGATCGGTTTCAATTTGATAATACTGAAAATCGATAGAGCGATCGATTTATATCTCTCGCTCTACTGAATCTACTCCGATCGATATTAAATTATGTAAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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