SE3120145

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10742
  • Fragaria vesca
  • SE3120145
  • Mutator
  • FrvM33
  • LG4:4768369-4769100
  • TATACTCNG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
 TATACTCN    TNCTNNCAAATTGATAGAGGAAATTTTTCAAATGGTGCCTCAAGTTAAGCCCATTCATCATTTTGACATCTAAATTTTGAAAACTATGATAATGATACCTCAACACTTAAACTCAATCTAACATTAGTTCCCTCCGTGATTGACACTATTAAGTTGGACTTTATTCATGGGCAAAATTGTTCTTTTCATGTTTTCCCTTCCCAAATTTTTTCCCTCCACAAACATTTCCCTCCAGAATAATATCCATTTTCCCATCATTATCAGAATTTATGTTGAGTCATGTGTTGGCTGCATACAAAAATTAGAGACATCTAGAAATTATAATATATACACCATTGGCCATAAATATCCATAATTAAAAG
         GTCA                                                                                                                                                                                                                                                                                                                                                                          
         ||||                                                                                                                                                                                                                                                                                                                                                                          T
         CTCC                                                                                                                                                                                                                                                                                                                                                                          
ATAGTTAAA    TTTAAAAAGTTTACCACAGGGTTCAATTCAAGTAAGTAGTAAAACTGTAGAGTTAGAACTTTGATACTATTACCATGGAGTTGTGAATTTGAGTGGGGTTGTAATCAAGGAAGGCACTAACTCTGGCAATTCAAACTGAAACAGATACCCGTTTTAACAGATTAGTCCAAAAGGGAGGTGTTTGGAATAGTCAACTTAATCTCAAAGAGCTGGACTTCTATAGTTGATACTTACACTCAGGATAATGGATCAATGGAAACTAACAAGATAATTCATATATACAAAGTACTTGAAGACATGAACTATATTTTATGTAAAATTAGTTACAACTAAGAAAAAGAGTGGCCACCCATTGTTTTCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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