SE3160148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10745
  • Fragaria vesca
  • SE3160148
  • Micron
  • FrvMi9
  • LG2:14033419-14033848
  • TATATAT
  • TATATATATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
            CACAA   A                                                           C                                                                         G                     ACCGAATTAGATTAAATAAATTAACA    --  AAGTTGTTCAAACAAAA
TATATATATATA     TCC TTTCCAGAGTGGGATCTTGCTTTGAAATTAAAGTGCGGGACTCCTTATTTCGCTCACTT CAGGTCGTATTTCCACATCTCAACCGTACAATGTCTAAAACACAGTGTGTAGATCATTCTTGCAAAGTTTCAT AAATTTGAAGATCATTTGGGT                          GAAC  AA                 
||||||||||||     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                          ||||  ||                  
ATATATATATAT     AGG GAAGGTCTCACCCTAGGGCGAAACTTTAATTTCACGCCCTGAGGAATAAAGCGAGTGAA GTCCAGCATAAAGGTGTAGAGTTGGCATGTTATAGATTTTGTGTCACACATCTAGTAAGGACGTTTCAAAGTA TTTAAACTTCTAGTAAACTCG                          GGCA  AG                 
            ----C   G                                                           A                                                                         A                     ------------------------AA    TT  CATTAAATGTGCTTGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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