SE3120162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10759
  • Fragaria vesca
  • SE3120162
  • Mutator
  • FrvM21
  • LG5:11326740-11327166
  • GTGTAACTT
  • GT

Secondary structure and sequence

TSD    TIR
5'



3'
GT  AACT            A G                 A                                     C  A                                  C  C                 AC           A            G        T  AAA  A  C       TT     CTGATCA     TTGT
  GT    TGGAAAATACTT C TTCGGACTAGTATGTAC TGTGCGTCCGGACTCTCTCTTATTTATATACATTTGC AA GTAAATTATGATCTTAACTGTTTAAAAGTTGAAT AA CAATGAAGATCACTTTT  AAAAAATCAAT TAAATAGAAATC TTTGCTCA CC   TG AT AAACAAA  AACGG       TGAGA    
  ||    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||| |||||||||||| |||||||| ||   || || |||||||  |||||       |||||     
  CA    GCCTTTTATGAA G AGGCCTGATCATACATG ACACGCAGGCCTGAGAGAGAATAAATGTATGTAAACG TT CATTTAGTACTAGAATTGACAAGTTTTCAACTTA TT GTTACTTTTAGTGGAGA  TTTTTTAGTTA ATTTGTCTTTAG AAACGAGT GG   AC TA TTTGTTT  TTGCC       ACTTT    
TT  ATAT            C G                 C                                     C  A                                  A  A                 CA           C            A        C  CTA  A  A       TC     -AAGAAC     CAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End