Plant MITE

SE3120163

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10760
Fragaria vesca
SE3120163
Mutator
FrvM14
LG4:2632121-2632320
CTTAAGGTA
TTAAGG

Secondary structure and sequence

TSD TIR

5'

3'

    C      TAAG     A    C                                                   -----------------AA    ATGCACATGGGA
     TTAAGG    GGAGA CTTC AATGAGGACCTTATAATGAGGACCAAGTGAGGACTTTCAAATGAATGGTTG                   TCAT            
     ||||||    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||            A
     AATTCC    CCTCT GAAG TTGCTCTTGGAATATTACTCTTGGTTCACTTCTGAAAGTTTACTTACCAAC                   TTAA            
AATGA      ----     C    A                                                   CTAATTCCAAAACTGAAAA    CTATAAAAGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120163

CTTAAGGTAAGGGAGAACTTCCAATGAGGACCTTATAATGAGGACCAAGTGAGGACTTTCAAATGAATGGTTGAATCATATGCACATGGGAATTAGAAAATATCAATTAAAAGTCAAAACCTTAATCCAACCATTCATTTGAAAGTCTTCACTTGGTTCTCATTATAAGGTTCTCGTTAGAAGCTCTCCCCTTAAAGTAA

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